purge old kernels, unused packages, and maybe dump some old logs. I presume yoou have emptied trash. You could try using the Computer Janitor on the System/Administration menu but I think I have heard mixed opinions about it. When you use the disk usage analyzer, be sure to have it scan the whole file system if you don't know where the extra space is being consumed.
My 250GB ext3 disk on Ubuntu 10.4 is full. I can't find more than 20GB worth of data on the disk. Disk Usage Analyzer and GUI file tools show the disk with only 10GB free. Disk utility and e2fsck show the drive as fine so I can't get it to repair itself. Even so I have about 220GB of mystery data on the disk.
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