I didn't find anything online, so I guess the easiest thing
to do is use a script to capture the output and echo it
back into the file. It seems to work okay.

something along the lines of:

cd target-mail-dir

for i in *
do
	o=`spam-cmd < "$i"`
	echo "$o" > "$i"
done

cd orig-dir
exit

Where spam-cmd is some form of spamc or spamassassin.

A bit kludgy, but allows me to go back and mark spam for
removal from archived emails from mailing lists that I 
subscribe to. 

PWD=`/bin/pwd`

if [[ $# -ne 1 ]];
then
   echo "usage: ${0} target-dir"
   exit 1
fi

cd ${1}

for i in *
do
  echo "checking ${i} ..."
  o=`/usr/bin/spamc -u spamd < "${i}"`
  echo "${o}" > "${i}"
done

cd ${PWD}
exit 0

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